barcode library Search Results


stereoseq 16 barcode library preparation kit  (Complete Genomics Inc)
97
Complete Genomics Inc stereoseq 16 barcode library preparation kit
Stereoseq 16 Barcode Library Preparation Kit, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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seq gbc library  (Addgene inc)
92
Addgene inc seq gbc library
Seq Gbc Library, supplied by Addgene inc, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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access array barcode library for illumina  (fluidigm)
95
fluidigm access array barcode library for illumina
Access Array Barcode Library For Illumina, supplied by fluidigm, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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addgene 115643 pcmv dr8 2 dvpr stewart  (Addgene inc)
93
Addgene inc addgene 115643 pcmv dr8 2 dvpr stewart
Addgene 115643 Pcmv Dr8 2 Dvpr Stewart, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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clontracer library  (Addgene inc)
93
Addgene inc clontracer library

Clontracer Library, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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human transcription factors  (Addgene inc)
93
Addgene inc human transcription factors

Human Transcription Factors, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 93 stars, based on 1 article reviews
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miseq sequencers  (fluidigm)
93
fluidigm miseq sequencers

Miseq Sequencers, supplied by fluidigm, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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retroviral supernatants  (Addgene inc)
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Addgene inc retroviral supernatants

Retroviral Supernatants, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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larry barcoding tool  (Addgene inc)
93
Addgene inc larry barcoding tool
a , Experimental design for studying HSC heterogeneity with the Lineage and RNA RecoverY <t>(LARRY)</t> lentiviral <t>barcoding</t> library. All panels are representative from n = 3 independent labeling experiments (5 mice). b, Schemes of low-output (top) and high-output (bottom) HSC clones. c, Single cell map showing clonal HSC output activity values. Major cell populations are labeled. d, Distribution of high-output (output activity >1) and low-output (output activity <1) HSC cells and clones (shown as % of total HSCs). Mean ± S.D. e, Schemes of lineage balanced (top) and biased (bottom) HSC clones. f, Single cell map showing clonal Mk-bias values. g, Distribution of Mk-biased and Multilineage HSCs (cells and clones), Mk cells and non-Mk cells (shown as % of total). Mean ± S.D. h, Genes differentially expressed in low-output (right, n = 7254 cells) versus high-output (left, n = 3512 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. Selected genes are labeled. i, Genes differentially expressed in Mk-biased (right, n = 3399 cells) versus Multilineage (left, n = 3771 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. j , Single cell map of HSCs, colored by signature score values. k , Heatmap showing the Pearson correlation between different signature scores across all HSCs (n = 10837). l, Scatter plot of Mk-bias and output activity (log-transformed) for each HSC clone, colored by clone HSC frequency. Dotted lines are the output activity threshold ( A i = 1), and the Mk-bias threshold ( B i = 4). Only clones with HSC frequency > 0.005 are depicted (n = 62).
Larry Barcoding Tool, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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clontracer barcoding library  (Addgene inc)
90
Addgene inc clontracer barcoding library
a , Experimental design for studying HSC heterogeneity with the Lineage and RNA RecoverY <t>(LARRY)</t> lentiviral <t>barcoding</t> library. All panels are representative from n = 3 independent labeling experiments (5 mice). b, Schemes of low-output (top) and high-output (bottom) HSC clones. c, Single cell map showing clonal HSC output activity values. Major cell populations are labeled. d, Distribution of high-output (output activity >1) and low-output (output activity <1) HSC cells and clones (shown as % of total HSCs). Mean ± S.D. e, Schemes of lineage balanced (top) and biased (bottom) HSC clones. f, Single cell map showing clonal Mk-bias values. g, Distribution of Mk-biased and Multilineage HSCs (cells and clones), Mk cells and non-Mk cells (shown as % of total). Mean ± S.D. h, Genes differentially expressed in low-output (right, n = 7254 cells) versus high-output (left, n = 3512 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. Selected genes are labeled. i, Genes differentially expressed in Mk-biased (right, n = 3399 cells) versus Multilineage (left, n = 3771 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. j , Single cell map of HSCs, colored by signature score values. k , Heatmap showing the Pearson correlation between different signature scores across all HSCs (n = 10837). l, Scatter plot of Mk-bias and output activity (log-transformed) for each HSC clone, colored by clone HSC frequency. Dotted lines are the output activity threshold ( A i = 1), and the Mk-bias threshold ( B i = 4). Only clones with HSC frequency > 0.005 are depicted (n = 62).
Clontracer Barcoding Library, supplied by Addgene inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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barcoded libraries  (Illumina Inc)
99
Illumina Inc barcoded libraries
a , Experimental design for studying HSC heterogeneity with the Lineage and RNA RecoverY <t>(LARRY)</t> lentiviral <t>barcoding</t> library. All panels are representative from n = 3 independent labeling experiments (5 mice). b, Schemes of low-output (top) and high-output (bottom) HSC clones. c, Single cell map showing clonal HSC output activity values. Major cell populations are labeled. d, Distribution of high-output (output activity >1) and low-output (output activity <1) HSC cells and clones (shown as % of total HSCs). Mean ± S.D. e, Schemes of lineage balanced (top) and biased (bottom) HSC clones. f, Single cell map showing clonal Mk-bias values. g, Distribution of Mk-biased and Multilineage HSCs (cells and clones), Mk cells and non-Mk cells (shown as % of total). Mean ± S.D. h, Genes differentially expressed in low-output (right, n = 7254 cells) versus high-output (left, n = 3512 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. Selected genes are labeled. i, Genes differentially expressed in Mk-biased (right, n = 3399 cells) versus Multilineage (left, n = 3771 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. j , Single cell map of HSCs, colored by signature score values. k , Heatmap showing the Pearson correlation between different signature scores across all HSCs (n = 10837). l, Scatter plot of Mk-bias and output activity (log-transformed) for each HSC clone, colored by clone HSC frequency. Dotted lines are the output activity threshold ( A i = 1), and the Mk-bias threshold ( B i = 4). Only clones with HSC frequency > 0.005 are depicted (n = 62).
Barcoded Libraries, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/barcoded libraries/product/Illumina Inc
Average 99 stars, based on 1 article reviews
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library backbone plasmid  (Addgene inc)
86
Addgene inc library backbone plasmid
a , Experimental design for studying HSC heterogeneity with the Lineage and RNA RecoverY <t>(LARRY)</t> lentiviral <t>barcoding</t> library. All panels are representative from n = 3 independent labeling experiments (5 mice). b, Schemes of low-output (top) and high-output (bottom) HSC clones. c, Single cell map showing clonal HSC output activity values. Major cell populations are labeled. d, Distribution of high-output (output activity >1) and low-output (output activity <1) HSC cells and clones (shown as % of total HSCs). Mean ± S.D. e, Schemes of lineage balanced (top) and biased (bottom) HSC clones. f, Single cell map showing clonal Mk-bias values. g, Distribution of Mk-biased and Multilineage HSCs (cells and clones), Mk cells and non-Mk cells (shown as % of total). Mean ± S.D. h, Genes differentially expressed in low-output (right, n = 7254 cells) versus high-output (left, n = 3512 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. Selected genes are labeled. i, Genes differentially expressed in Mk-biased (right, n = 3399 cells) versus Multilineage (left, n = 3771 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. j , Single cell map of HSCs, colored by signature score values. k , Heatmap showing the Pearson correlation between different signature scores across all HSCs (n = 10837). l, Scatter plot of Mk-bias and output activity (log-transformed) for each HSC clone, colored by clone HSC frequency. Dotted lines are the output activity threshold ( A i = 1), and the Mk-bias threshold ( B i = 4). Only clones with HSC frequency > 0.005 are depicted (n = 62).
Library Backbone Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Journal: iScience

Article Title: Lineages of embryonic stem cells show non-Markovian state transitions

doi: 10.1016/j.isci.2021.102879

Figure Lengend Snippet:

Article Snippet: ESCs were labeled using ClonTracer library ( , Addgene #67267).

Techniques: Next-Generation Sequencing, Recombinant

a , Experimental design for studying HSC heterogeneity with the Lineage and RNA RecoverY (LARRY) lentiviral barcoding library. All panels are representative from n = 3 independent labeling experiments (5 mice). b, Schemes of low-output (top) and high-output (bottom) HSC clones. c, Single cell map showing clonal HSC output activity values. Major cell populations are labeled. d, Distribution of high-output (output activity >1) and low-output (output activity <1) HSC cells and clones (shown as % of total HSCs). Mean ± S.D. e, Schemes of lineage balanced (top) and biased (bottom) HSC clones. f, Single cell map showing clonal Mk-bias values. g, Distribution of Mk-biased and Multilineage HSCs (cells and clones), Mk cells and non-Mk cells (shown as % of total). Mean ± S.D. h, Genes differentially expressed in low-output (right, n = 7254 cells) versus high-output (left, n = 3512 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. Selected genes are labeled. i, Genes differentially expressed in Mk-biased (right, n = 3399 cells) versus Multilineage (left, n = 3771 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. j , Single cell map of HSCs, colored by signature score values. k , Heatmap showing the Pearson correlation between different signature scores across all HSCs (n = 10837). l, Scatter plot of Mk-bias and output activity (log-transformed) for each HSC clone, colored by clone HSC frequency. Dotted lines are the output activity threshold ( A i = 1), and the Mk-bias threshold ( B i = 4). Only clones with HSC frequency > 0.005 are depicted (n = 62).

Journal: Nature

Article Title: Single-cell lineage tracing unveils a role for Tcf15 in haematopoiesis

doi: 10.1038/s41586-020-2503-6

Figure Lengend Snippet: a , Experimental design for studying HSC heterogeneity with the Lineage and RNA RecoverY (LARRY) lentiviral barcoding library. All panels are representative from n = 3 independent labeling experiments (5 mice). b, Schemes of low-output (top) and high-output (bottom) HSC clones. c, Single cell map showing clonal HSC output activity values. Major cell populations are labeled. d, Distribution of high-output (output activity >1) and low-output (output activity <1) HSC cells and clones (shown as % of total HSCs). Mean ± S.D. e, Schemes of lineage balanced (top) and biased (bottom) HSC clones. f, Single cell map showing clonal Mk-bias values. g, Distribution of Mk-biased and Multilineage HSCs (cells and clones), Mk cells and non-Mk cells (shown as % of total). Mean ± S.D. h, Genes differentially expressed in low-output (right, n = 7254 cells) versus high-output (left, n = 3512 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. Selected genes are labeled. i, Genes differentially expressed in Mk-biased (right, n = 3399 cells) versus Multilineage (left, n = 3771 cells) HSCs. Genes with adjusted p-value<0.01 (Benjamini-Hochberg-corrected t-test) and fold-change>2 are colored. j , Single cell map of HSCs, colored by signature score values. k , Heatmap showing the Pearson correlation between different signature scores across all HSCs (n = 10837). l, Scatter plot of Mk-bias and output activity (log-transformed) for each HSC clone, colored by clone HSC frequency. Dotted lines are the output activity threshold ( A i = 1), and the Mk-bias threshold ( B i = 4). Only clones with HSC frequency > 0.005 are depicted (n = 62).

Article Snippet: The LARRY barcoding tool is available at Addgene (#140024).

Techniques: Labeling, Clone Assay, Activity Assay, Transformation Assay